Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
HNSC rs76676868 chr19:2411573 T/TTTAA 1.6E-14 506 22.15 21.37 2.55 KM Plot
HNSC rs766880 chr2:30748733 G/T 3.58E-5 515 22.87 20.2 10.57 KM Plot
HNSC rs7686110 chr4:140283973 C/G 1.52E-5 508 20.73 26.72 18.2 KM Plot
HNSC rs76939104 chr19:2410935 A/G 1.72E-14 505 22.2 21.37 2.55 KM Plot
HNSC rs77032439 chr2:100128610 C/T 8.24E-6 501 21.78 20.15 6.47 KM Plot
HNSC rs77430135 chr21:48072958 T/C 4.71E-9 513 21.52 21.02 2.73 KM Plot
HNSC rs77930122 chr21:48083526 T/C 5.16E-9 511 21.52 21.02 2.73 KM Plot
HNSC rs78144167 chr13:20364801 A/G 4.43E-5 514 26.3 16.23 22.82 KM Plot
HNSC rs78463142 chr21:47964481 A/G 3.48E-8 512 21.33 22.9 2.87 KM Plot
HNSC rs78965284 chr6:15263354 G/T 2.43E-5 511 22.1 21.37 9.37 KM Plot
HNSC rs79100421 chr21:47969962 T/C 3.68E-8 510 21.3 22.78 2.87 KM Plot
HNSC rs7911558 chr10:94210289 C/T 2.68E-5 509 23.17 21.2 9.3 KM Plot
HNSC rs79292582 chr6:15264190 C/T 2.43E-5 511 22.1 21.37 9.37 KM Plot
HNSC rs79303353 chr1:36402056 G/A 2.13E-11 514 21.3 30.92 3.73 KM Plot
HNSC rs79327949 chr21:48092608 A/G 5.16E-9 511 21.52 21.02 2.73 KM Plot